                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:176 nt.     Distance to run of Ts=0 nt.   Size=18 nt.     Delta G= -9.40 kcal/mol
Antiterminator: Size=42 nt.     Delta G= -5.50 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G= -7.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ccactttattttcgtgtggtatagtaagatactgaagggtagtgttttgaaaaagtaatatattttacaaattgttgtctttctgatgacatgtcaagtt
tagtagcccatttgggttgctttattatgcaatatatattttaatatgagtggcacctcttataaattaagaggttaataggtgtctcgaattgattttg
ggtacactgtatccaccactttaggttcgttcatgtatgtggggatattatgggcccgtataacgggataaaaagaatatagaaatagaggaatcgtaaa
ATG

    BA_0174 Gene: BA_0174     GI: 21397549     BI number: BA_0174     GOG: COG0812     Description: MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding domai at a  a t  t       ct g  a      t  g at       t  a at       t  t at        cg at        ta a  a       gc gc        ta ta       |  t ta       |  g ta       |  t t  t      t  c g  t      g  a t  g       ta gt        tg        tt at        at       a  t t  g       at        cg g  t       at        cg gc       |  a       cg gt        cg        gt at        at        at at        ta        tg gc        tg        gc                         tttattatgcaatatatattttaatatgagtggcacctcttataaattaagaggttaataggtgtctcgaattgattttgggtacactgtatccaccactttaggttcgttcatgtatgtggggatattatgggcccgtataacgggataaaaagaatatagaaatagaggaatcgtaaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG0812 UDP-N-acetylmuramate dehydrogenase ... can be seen here     ..................................................................................................................