Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:82 nt. Distance to gene:110 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G= -9.30 kcal/mol
Antiterminator: Distance from promoter:58 nt. Size=41 nt. Delta G= -9.70 kcal/mol
Anti-antiterminator: Distance from promoter:20 nt. Size=41 nt. Delta G= -4.70 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ATGATT-AACGAT. It has a score value of 65.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGATTTTAGCAATTATTTCTTTAACGATACATGCTTCAAACAGTAAAGTAGGAGCGA
ATGGATTTCTTGAAGAACCTTTCTTTTTCTTAGTACCGATAAGTTATGTATTGTCCCT
TAGTGGTATTGGTGTATTACTATTTGGATTTATTACTTCAAAGCTGAAAAAGAGCAAT
AGATAGggctgttaatcgggacaaaacactcctcatgaaatagaaacatacgatatggaagaaaaatcataagtgagttgaataATG
BA_0181
Gene: BA_0181 GI: 21397556 BI number: BA_0181 GOG: ------- Description: hypothetical protein predicted by GeneMar
G
T A
T A A
CG T T
TA G T
TA TG
T | AT GG
A | T C T T
GC T C TG
GC GC AT
T T AT TA
AT AT GT
AT TA GT
GC A G TA
| T GT GC
| T CG AT
C T CG TA
GT AT | T
AT TA T T
GC GT C T
GT AT CG
AT TG CG
TA TG TA
TTTATTACTTCAAAGCTGAAAAAGAGCAATAGATAGggctgttaatcgggacaaaacactcctcatgaaatagaaacatacgatatggaagaaaaatcataagtgagttgaataATG
..................................................................................................................