                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:111 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-17.00 kcal/mol
Antiterminator: Size=66 nt.     Delta G= -9.35 kcal/mol
Anti-antiterminator:   Size=53 nt.     Delta G= -7.62 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTTACGTTATTTTATTTATATCGGAATTACAGCGTTAATCCGTTTAATTATCGTATCT
CATGAGGAACCGATGGAGACGTTATTATACGCAGGAGCAATTCTTGTTTTAGTCATTG
CGTTATACATATCGAATATGAGAGATTTGAGAAAAGAGTAGtagtgcagacataagtttgcactactttt
tttatatcttgaccttaaagttacttgaaagtttacaataaaattagggcgtttgaaattgaaaaaaattgagaaattaagtaaagaggtttcttttact
tggaggttatagaaATG

    BA_0183 Gene: BA_0183     GI: 21397558     BI number: BA_0183     GOG: COG1670     Description: Acetyltransf, Acetyltransferase (GNAT) famil             A           G  G           T  A           A  G            TA            AT            AT   T        GT T  G       CG C  T       TA T  T      A  G T  T      T  A A  T      A  A A  A      C  A CG       A  A GT       T  G A  C      A  A G  A      T  G GT       T  T AT       G  A CG        CG GC        Gt        ta CG        Ta       a  a |  T       Tg        cg AT        At        at TA        Cg        gt AT       T  c       at TA       G  |       cg |  C      A  |       gc TA       T  |       ta AT        Ta        gc TA        Tg        at T  T       Ta        ta GC        Gc        Gc CG        Ta        At                         ttttttatatcttgaccttaaagttacttgaaagtttacaataaaattagggcgtttgaaattgaaaaaaattgagaaattaagtaaagaggtttcttttacttggaggttatagaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins ... can be seen here     ..................................................................................................................