                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:115 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-12.10 kcal/mol
Antiterminator: Size=71 nt.     Delta G= -6.52 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G= -3.69 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGCAAWTTCAGGCGGTGCAGAGCAATTATTTGGTAAGCAAAAAGCACGTGGAATTGAA
GCGGTATTAAACCGCATTACAATTGTTTTASCTGTATTGTTCTTCGCATTAACAATTG
GTGTTACGTACTTAAACTTATAGaatggaaagaagaagcgttagtaagatgtactaatggttcttctttttttgttttgccat
ttgaaagatgtttctaattagattatagaaatacaaatatggtacactagatatagaaagaatacgactagattacagaagagaaagaggagaagtacat
gATG

    BA_0195 Gene: BA_0195     GI: 21397570     BI number: BA_0195     GOG: COG1647     Description: DLH, Dienelactone hydrolase famil             a           g  a           a  g           a  c           g  g           a  t           a  t            aa            gg            gt           t  a           a  a   T       a  g T  G      G  a A  G      A  t AT       T  | CG       A  | AT        T AT        T TA        C T  C       A A  G      A          a C  T      A        g  t G  A       T       a  g C  C       T        at T  T       C        ta T  T       A        gc C  A       T        at TA       G         ta TA        C        ta GC        A        gt T  T      |         cg T  |      |        g  g AT       T         at TA       T         at GT        G        gc TA        T        at CG        G        at                         ctttttttgttttgccatttgaaagatgtttctaattagattatagaaatacaaatatggtacactagatatagaaagaatacgactagattacagaagagaaagaggagaagtacatgATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1647 Esterase/lipase ... can be seen here     ..................................................................................................................