                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:198 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-13.30 kcal/mol
Antiterminator: Size=69 nt.     Delta G= -6.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAAACGCGAAACAAATCGAAAAGATTTTAAATAAAGTGACCTATCTTTTAAAAGAATA
Gatatcgaaagaacgcttcaataaaaaggcgttcttttcttttttcctatcgcttttctaacgtttaaatttatgtaattcggttatgatgttgaagata
cataagcagggaattttaaaaacatagcgaatatttcatggtacaactacatatttttttgatttaaagtggtttcgtttgacctttattgaccataatt
gtattataagactaagaaagcttttgaaggaggaaataacagATG

    BA_0238 Gene: BA_0238     GI: 21397613     BI number: BA_0238     GOG: COG0740     Description: CLP_protease, Clp proteas CC A  T G  A T  T GC AT AT AT T  T A  A A  A A  A TA TG TA TA AT |  A G  G A  a A  t       ta A  a      a  a At       a  a Gc       c  a Cg        ta Ta        tg A  a       cg A  a       gc A  g       cg C  a       at A  a       at A  |       gc A  |       at Gc        at Cg        at Gc        gt             cttttttcctatcgcttttctaacgtttaaatttatgtaattcggttatgatgttgaagatacataagcagggaattttaaaaacatagcgaatatttcatggtacaactacatatttttttgatttaaagtggtttcgtttgacctttattgaccataattgtattataagactaagaaagcttttgaaggaggaaataacagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [OU] COG0740 Protease subunit of ATP-dependent Clp proteases ... can be seen here     ..................................................................................................................