Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:123 nt.    Distance to gene:58 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-12.90 kcal/mol
Antiterminator:    Distance from promoter:62 nt. Size=72 nt.     Delta G=-17.10 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTGGAA-TAGAAT. It has a score value of 62.25 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGGAACAATGGGGGAATTGGTTAGAATCAGGAATCGTTTTAAATAAAGCAGCGAGTC
GCGTTAGCCAAGTTTGGGCGATTATACTTTTAGTGGATACAGCTATTTCATTTTCATA
TGTTCTTTTTCCGAAGAAGGAGAAAGGGAAAGAATGCTACTTTCATAGTTGAaagtagctt
ttctggtatacaaaaatttttataggagaggatgacaataagaaaaagaaccagttttatATG

    BA_0256


Gene: BA_0256     GI: 21397631     BI number: BA_0256     GOG: -------     Description: hypothetical protein predicted by GeneMar


 GA
C  A
 CG
 TA
 TA
 TG
 TG
 TA
 CG
 TA
 TA
G  A
T  G
A  |
T  |
A  |
 CG
 TG
 TA
 TA
 TA
A  |
 CG
 TA
 TA
T  T
A  |
T  |       AG
 CG       T  T
 GC        AT
 AT        CG
C  A       TA
A  C       Ta
T  T       Ta
 AT        Cg
 GT        At
 GC        Ta
 TA        Cg
 GT        Gc
            ttttctggtatacaaaaatttttataggagaggatgacaataagaaaaagaaccagttttatATG
    ..................................................................................................................