                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:188 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-16.40 kcal/mol
Antiterminator: Size=78 nt.     Delta G=-15.84 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAGTGTTATGGATGAAGTCCAAAATTGGGCTGAGAAATGGATGAAATAAcgttttgatttcatc
cgtattagtatatttaataaaacgtaagggaaaccttgcgttttttctttgcttataaaaaccttttaaaactctacacatacatacaaaaytatgcata
ttttgcgatagagttacatataatattacatttgttttacaaaagcgtaacattagcaaaaaaatcccgaattatggtataaattttataggttatatac
ggaaaaaagaaaaaagaaagcggtgtaaaaaataaaATG

    BA_0281 Gene: BA_0281     GI: 21397656     BI number: BA_0281     GOG: COG0791,COG3883     Description: NLPC_P60, NLP/P60 famil   t g  t c  t A  t A  g Ta At At At Gc Ta At Gc Gc Tg At A  a A  | G  | At Gt Ta Cg Gt G  a G  t T  | Ta At At At |  a |  a |  t |  a       aa |  a      g  a |  a       gc |  a       gc |  c       at |  g       at |  t       tg |  a       gc |  a       cg A  g       at Cg        at Cg        at Ta        at             ttctttgcttataaaaaccttttaaaactctacacatacatacaaaaytatgcatattttgcgatagagttacatataatattacatttgttttacaaaagcgtaacattagcaaaaaaatcccgaattatggtataaattttataggttatatacggaaaaaagaaaaaagaaagcggtgtaaaaaataaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) ... can be seen here [S] COG3883 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................