                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:92 nt.    Distance to gene:134 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G= -8.60 kcal/mol
Antiterminator:    Distance from promoter:42 nt. Size=62 nt.     Delta G= -7.00 kcal/mol
Anti-antiterminator:    Distance from promoter:14 nt.    Size=60 nt.     Delta G=-11.50 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTAGAA-TACAAT. It has a score value of 64.26 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTAGAAGCAAAATATCCACATGTTACAATTCGTACCGGTTATTTCGGTGCTGTAATTG
GAACGCATTTAGGTGAAGGTGCACTAGGTCTTGGATGGTATACGAAGTAAtaaagatataaaa
agctctctttcggaagagggtttttttacggatattttacgttcagttgacaagttaatatttggaaatggtaaaatgtacgtaaaataaaataatgagg
aaagttttataacttactttttacaagaaactatattataatagaagagaggtgaaacatGTG

    BA_0282 Gene: BA_0282     GI: 21397657     BI number: BA_0282     GOG: COG1733     Description: DUF24, Protein of unknown function DUF2             G           C  A GT       A  A G  G       TG A  A       AT TA        TA TG       G  A TG       G  t AT       T  a CG       A  | GC       G  | |  A      G  | |  C       Ta |  T       Ta |  A       Cg C  G       Ta A  G       Gt AT       |  a GC       |  t GT       G  a T  T      A  a T  G      T  a A  G      C  a A  |      A  a TA        Cg        cg GT        Gc       t  g TG       |  t       ta CG       |  c       ta GT       T  t       cg TA        Gc        ta GT        Gt        cg |  A       At        tg GC        At        cg CG        Gc        gt TA        Tg        at                         tttttacggatattttacgttcagttgacaagttaatatttggaaatggtaaaatgtacgtaaaataaaataatgaggaaagttttataacttactttttacaagaaactatattataatagaagagaggtgaaacatGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1733 Predicted transcriptional regulators ... can be seen here     ..................................................................................................................