                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:181 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-10.40 kcal/mol
Antiterminator: Size=52 nt.     Delta G= -6.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AATCCAACATGTCATCCTCTTAAacacgaataatttctatcctttctacattcaatatatgtatttaaatggaaatcaaggta
tagatttatgccttgattttttcttgtaatctttttgtcatattcagattcccgcataagtcttgacagtaatcgacatgctctttagaatttttaacag
ttggtaaatatttcttcactacattacagacagaaaggaatcgacaaattatgaaaaaataccttgccggtcttgcggcagtgtctgtagcaggaggagc
agcacctacacttgataGTG

    BA_0321 Gene: BA_0321     GI: 21397696     BI number: BA_0321     GOG: -------     Description: SH3b, Bacterial SH3 domain homologue at t  g at ta at at |  t c  a ta ta at cg |  g |  a a  a t  a c  t       at t  c      g  t ta        at ta        ta cg        at cg        tg |  t       gc ta        gc at        at ta        at cg        cg ta        ta             ttttttcttgtaatctttttgtcatattcagattcccgcataagtcttgacagtaatcgacatgctctttagaatttttaacagttggtaaatatttcttcactacattacagacagaaaggaatcgacaaattatgaaaaaataccttgccggtcttgcggcagtgtctgtagcaggaggagcagcacctacacttgataGTG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_anthracis_A2012                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:194 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-13.30 kcal/mol Antiterminator: Size=52 nt.     Delta G= -6.60 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case AATCCAACATGTCATCCTCTTAAacacgaataatttctatcctttctacattcaatatatgtatttaaatggaaatcaaggta tagatttatgccttgattttttcttgtaatctttttgtcatattcagattcccgcataagtcttgacagtaatcgacatgctctttagaatttttaacag ttggtaaatatttcttcactacattacagacagaaaggaatcgacaaattatgaaaaaataccttgccggtcttgcggcagtgtctgtagcaggaggagc agcacctacacttgataGTG     BA_0321 Gene: BA_0321     GI: 21397696     BI number: BA_0321     GOG: -------     Description: SH3b, Bacterial SH3 domain homologue at t  t gt ta aa ta |  t a  g tg aa aa ca |  t |  c       at t  a      g  t t  a       at a  g       ta c  g       at at        tg ta        gc ct        gc ta        at |  g       at ta        cg tt        ta ct        at c        at t        at             tttcttgtaatctttttgtcatattcagattcccgcataagtcttgacagtaatcgacatgctctttagaatttttaacagttggtaaatatttcttcactacattacagacagaaaggaatcgacaaattatgaaaaaataccttgccggtcttgcggcagtgtctgtagcaggaggagcagcacctacacttgataGTG     ..................................................................................................................