Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:55 nt. Distance to gene:117 nt. Distance to run of Ts=1 nt. Size=34 nt. Delta G=-10.00 kcal/mol
Antiterminator: Distance from promoter:28 nt. Size=32 nt. Delta G= -5.90 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G= -8.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGTCT-TAAGAA. It has a score value of 62.25 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGTCTTAAACAATGGCTTAGATAAGAACGGAAAAACAGTTTTTAAGAACAAACAATT
TAAGCGCGTAAAAACAAACGCAAACTTAGAGCAAATACAAACCGTAGCTCGTGCTCTA
GCTTCTTTACAAGCATCACCACTTCACGCTGTACAACTTGTTAGCACATCAGATCTTT
CTAGCCTATAAggtgaaactttaatcaacactcacagctcgatcaataaaaaggaggaaataacatATG
BA_0338
Gene: BA_0338 GI: 21397713 BI number: BA_0338 GOG: ------- Description: hypothetical protein predicted by GeneMar
A
A A
A A
G C
G A
CG
AT
AT
GT
AT
AT
TA
| A
| G
| A
| A A
| C A C
| A AA A C
| A A C CG
| A A A AT
| C A A TA
| A TA | G
| A GC | C
AT CG | T
GT GC A C
AT | A A G
TA | A AT
TA C A CG
CG GC GC
GC AT AT
| G AT GC
GC TA AT
TG TG TA
AT TA TG
CTTCTTTACAAGCATCACCACTTCACGCTGTACAACTTGTTAGCACATCAGATCTTTCTAGCCTATAAggtgaaactttaatcaacactcacagctcgatcaataaaaaggaggaaataacatATG
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