                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:30 nt.    Distance to gene:78 nt.     Distance to run of Ts=0 nt.   Size=36 nt.     Delta G=-22.30 kcal/mol
Antiterminator:    Distance from promoter:21 nt. Size=22 nt.     Delta G= -4.50 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTGAAA-TATGAA. It has a score value of 72.29 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGAAATAAAGACGATGAATGATTATGAAGGAAAATTGATGGTGAAGAAGTAGggggaaag
ggaccgtcctaagagatacgttgggacggtccttcttttttataacacttcataaaatatctaaatcttccattaattgtttggtataataggataaaaa
agtattcgggggagacggaATG

    BA_0381 Gene: BA_0381     GI: 21397756     BI number: BA_0381     GOG: -------     Description: ABC_tran, ABC transporte            at           g  a           a  c           g  g            at            at   g        tg a  g       cg a  g       cg a  a       ta gc        gc gc        cg |  g       cg gt        at gc        gc Gc        gc At        gt Ta        at             cttttttataacacttcataaaatatctaaatcttccattaattgtttggtataataggataaaaaagtattcgggggagacggaATG     ..................................................................................................................