                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:140 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-17.70 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -5.60 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G= -6.93 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACGATGGCAACAACACGTGGAAAGCTAATTGGTGGAGCACGTGCTGTTTATGCGGCGA
AGGAAGAGACTATCACTTGCCGTTAAagttacgaataaggtatgttgtctgactttatcatagaagaaagaaaagaccgat
tttcggtcttttttttcttttatgatatagaaagtcatgttagaatgtagttgaaaacatgaaggttcgaaagaattacaacctgaattttcgttttttc
tgaataaataagaaaaaactgttgggaatcgatgtaattcgttcagaaaagggggattttgGTG

    BA_0413 Gene: BA_0413     GI: 21397788     BI number: BA_0413     GOG: -------     Description: SHMT, S hydroxymethyltransferas   t t  a g  c a  g A  a A  a T  t T  a G  a Cg        ca Cg       t  t Gt       a  a Ta        tg T  t       ta         t Cg        ta       t  t At        cg       a  t C  t      a  a       gc T  |      g  a       cg A  |       ta        cg T  |       cg        at Cg        ta        gc At       g  a       at Gc       t  a       at At       t  a       at |  g      g  g       at |  a      t  |       gt Gc       a  |       at At        ta        at At        gc        at Gt        gc        gc                         ttttatgatatagaaagtcatgttagaatgtagttgaaaacatgaaggttcgaaagaattacaacctgaattttcgttttttctgaataaataagaaaaaactgttgggaatcgatgtaattcgttcagaaaagggggattttgGTG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_anthracis_A2012                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:147 nt.     Distance to run of Ts=0 nt.   Size=19 nt.     Delta G= -9.30 kcal/mol Antiterminator: Size=40 nt.     Delta G= -5.60 kcal/mol Anti-antiterminator:   Size=75 nt.     Delta G=-16.50 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case ACGATGGCAACAACACGTGGAAAGCTAATTGGTGGAGCACGTGCTGTTTATGCGGCGA AGGAAGAGACTATCACTTGCCGTTAAagttacgaataaggtatgttgtctgactttatcatagaagaaagaaaagaccgat tttcggtcttttttttcttttatgatatagaaagtcatgttagaatgtagttgaaaacatgaaggttcgaaagaattacaacctgaattttcgttttttc tgaataaataagaaaaaactgttgggaatcgatgtaattcgttcagaaaagggggattttgGTG     BA_0413 Gene: BA_0413     GI: 21397788     BI number: BA_0413     GOG: -------     Description: SHMT, S hydroxymethyltransferas GA A  C G  T A  A AT GC G  A A  C AT GT CG GC GC CG GT |  T |  A |  A |  a |  g |  t |  t       tt |  a      c  t |  c      a  a T  g       gt A  a       tc T  a       ca T  t       tt T  a      g  a G  a      t  g Tg        ta Cg        ga Gt        tg         t Ta       a  a      t  t Gt       t  a      a  t Cg       g  a       gc At       g  g       cg C  t      a  |       cg G  g      a  |       at At        ta        gc Gc        aa        at Gt        aa        at                         ttttttcttttatgatatagaaagtcatgttagaatgtagttgaaaacatgaaggttcgaaagaattacaacctgaattttcgttttttctgaataaataagaaaaaactgttgggaatcgatgtaattcgttcagaaaagggggattttgGTG     ..................................................................................................................