                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:192 nt.     Distance to run of Ts=1 nt.   Size=32 nt.     Delta G=-18.10 kcal/mol

                                                                        Nomenclature/Definitions

GTGTAACTGCTACAAAAGGTTCAACAGAAGTAATGAAAGTTACAATGAAATAAttattaca
tgaagggagtccgtttcgtatgaaatggattccttattttgtttttgtagtctgttctttatgtatggtaaaatactttgggcacttggaaatagggttt
cacatatatgtggataaggcgcatttttcttagaaaaaatataagagaaatgcgcctttcgtatattcacatttcttttgttctattgtaatgtacgcta
tgataaaaggtaagaaatagagaaaaggggtgggtttagATG

    BA_0417 Gene: BA_0417     GI: 21397792     BI number: BA_0417     GOG: COG0394     Description: LMWPc, Low molecular weight phosphotyrosine protein phosphatas           ta          g  t           cg           ta           ta           ta           gt           cg           cg           ta           gt           at           gc           gc           gt           at             attttgtttttgtagtctgttctttatgtatggtaaaatactttgggcacttggaaatagggtttcacatatatgtggataaggcgcatttttcttagaaaaaatataagagaaatgcgcctttcgtatattcacatttcttttgttctattgtaatgtacgctatgataaaaggtaagaaatagagaaaaggggtgggtttagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG0394 Protein-tyrosine-phosphatase ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_anthracis_A2012                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:201 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-17.50 kcal/mol Antiterminator: Size=71 nt.     Delta G= -7.14 kcal/mol Anti-antiterminator:   Size=23 nt.     Delta G= -3.20 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GTGTAACTGCTACAAAAGGTTCAACAGAAGTAATGAAAGTTACAATGAAATAAttattaca tgaagggagtccgtttcgtatgaaatggattccttattttgtttttgtagtctgttctttatgtatggtaaaatactttgggcacttggaaatagggttt cacatatatgtggataaggcgcatttttcttagaaaaaatataagagaaatgcgcctttcgtatattcacatttcttttgttctattgtaatgtacgcta tgataaaaggtaagaaatagagaaaaggggtgggtttagATG     BA_0417 Gene: BA_0417     GI: 21397792     BI number: BA_0417     GOG: COG0394     Description: LMWPc, Low molecular weight phosphotyrosine protein phosphatas             g           g  g           a  a           a  g            gt            tc            ac           c  g           a  t            tt            tt            ac            tg            tt            Aa            At           T           A           A           A           G           T             A         ta            A       g  t            C        cg AA        A        ta G  A      |         ta TG        T        ta AT        T        gt AT       G         cg TA        A        cg GC        A        ta A  A       A        gt A  A      |         at G  |       G        gc AT        T        gc CG        A        gt                         tattttgtttttgtagtctgttctttatgtatggtaaaatactttgggcacttggaaatagggtttcacatatatgtggataaggcgcatttttcttagaaaaaatataagagaaatgcgcctttcgtatattcacatttcttttgttctattgtaatgtacgctatgataaaaggtaagaaatagagaaaaggggtgggtttagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG0394 Protein-tyrosine-phosphatase ... can be seen here     ..................................................................................................................