Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance to gene:2 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-12.70 kcal/mol
Antiterminator: Size=57 nt. Delta G= -4.63 kcal/mol
Anti-antiterminator: Size=43 nt. Delta G= -5.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAAAGAAAGTTGTAAAGCAGGAAGTCGCAACAAAAGTAACAGCTTCTGAAAAGAAAGT
AGTAAAAAATGAAACAAAAGTAGAAGAACAACCTGTAAGTAAAGAGGAAACAAAAACT
GTGGAAAAAGTGGAGAAACCTGTGGAGCKAAAACAAGAAAAACAAAATGAGTATGTAA
AAGTAGAAGAGGAAGAAGAAGAGCCAGAAGTTAAGTTATTTATTGTAGAAGCTTTTAC
ATCTTTATTCTCTAAATAGtactattcgtaaatcccttctcatatataaaaaagaggagggatttattATG
BA_0424
Gene: BA_0424 GI: 21397799 BI number: BA_0424 GOG: ------- Description: hypothetical protein predicted by GeneMar
A
T A
C A
T T
C A
T G
T t
A A a
T T T c
T T T t
TG T a
AT C t
TA T t
TG A c
G A Cg
A | At ta
A | Ta a a
TA Ta t a
TG Ta a a
GC | t t a
AT T c a a
AT C c cg
GT Gc ta
AT At cg
C A At tg
C C Gc ta
G A At cg
AT T | cg
GC Gc cg
AT Ta ta
tttattATG
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