Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance to gene:163 nt. Distance to run of Ts=0 nt. Size=31 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=24 nt. Delta G= -7.10 kcal/mol
Anti-antiterminator: Size=52 nt. Delta G= -9.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGTTTTAAACCGTCCACGTCATCAAGCGATTATTGAAGAAATTCGTAAAGCTGGTGC
TCGTATTAAATTGATTAATGATGGAGACGTAGCAGGTGCAATTAATACTGCATTTGAT
CGTACAGGTGTAGATATTTTATTCGGAMKWGGTGGTGCGCKWGAGGGTGTATTAGCAn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
agctattaccacaaakcgaagctgaaTTG
BA_0433
Gene: BA_0433 GI: 21397808 BI number: BA_0433 GOG: ------- Description: hypothetical protein predicted by GeneMar
T
T G
A A
AT
AT
TA
TA
AT
TG
| A
| T
G G
CG
TA CG
CG T T
G | A A
TA GC
GC AA TA
| G T T TG
GT T A TG
TA A C AT
CG AT CG
GC CG GT
| A GC TA
A G TA CG
A G GT | A
AT GT AT
TG AT TA
GC CG AT
TTTATTCGGAMKWGGTGGTGCGCKWGAGGGTGTATTAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagctattaccacaaakcgaagctgaaTTG
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