Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:77 nt. Distance to gene:110 nt. Distance to run of Ts=3 nt. Size=32 nt. Delta G= -9.60 kcal/mol
Antiterminator: Distance from promoter:44 nt. Size=45 nt. Delta G= -6.70 kcal/mol
Anti-antiterminator: Distance from promoter:10 nt. Size=45 nt. Delta G= -3.46 kcal/mol
Nomenclature/Definitions
The most likely promoter is: tagagt-tataat. It has a score value of 61.58 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tagagtatagtatgtcatttttcgtataatacaagtacagatatatgactagggaaaaagaagtgcaaacaggaggctcatatatgaaattggtaattaa
agttttagttgtattcgccattattctaggtggaacagcgtattatttgaacacaaaaacagaaggtgtacaacttttgtagacaacttcttttcaaata
aagaaatacaagattattatgcggttatagataaaggtgagaaaaaagacggagagtatTTG
BA_0471
Gene: BA_0471 GI: 21397846 BI number: BA_0471 GOG: ------- Description: hypothetical protein predicted by GeneMar
a
ag a t
a t t t
g g g a
a c g a
a a ta
a a tg
a a at t
a c at a t
g a at t c
g g gt t t
g g ta a a
a a | g cg
tg | t cg
cg at gt
| c tg cg
at at tg
gc ta ta
ta at a |
at c t ta
ta t c gc
at cg ta
ta gc tg
at gc gc
gtattatttgaacacaaaaacagaaggtgtacaacttttgtagacaacttcttttcaaataaagaaatacaagattattatgcggttatagataaaggtgagaaaaaagacggagagtatTTG
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