                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:143 nt.     Distance to run of Ts=0 nt.   Size=23 nt.     Delta G=-10.60 kcal/mol
Antiterminator: Size=38 nt.     Delta G= -4.20 kcal/mol
Anti-antiterminator:   Size=26 nt.     Delta G= -4.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TATTACAGAAAAAACAGTAAAAGCTCATGTAAGTAGTATTTTGAGTAAGTTGCATTTA
TCTGATCGCACGCAAGCGGCATTATATGCAGTGAAAAACGGAATTGTATAAgacaaaagtcg
taagacctagttcgcctttagaaggtggactttttttatggaaaaatacgtctatgtgaggacgaaattgtctcgatatgaagataaaatatattttgta
agcaacaaacaacaattacaagggataccttttttgaaagcatataacaacagaagagctagtactaggaggaaaagataATG

    BA_0518 Gene: BA_0518     GI: 21397893     BI number: BA_0518     GOG: COG1182     Description: NADHdh_2, NAD(P)H dehydrogenase (quinone            aa           a  a            cg            at            gc           |  g           A  t AA       A  a A  C      T  a        a A  G      A  g      t  g A  G       Ta        ta G  A       Gc        ta TA       |  c       cg GT       T  t       cg AT       T  a       gt CG       A  g       cg GT        At        tg TA        Gt        ta AT        Gc        gc TA        Cg        at                         ttttttatggaaaaatacgtctatgtgaggacgaaattgtctcgatatgaagataaaatatattttgtaagcaacaaacaacaattacaagggataccttttttgaaagcatataacaacagaagagctagtactaggaggaaaagataATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [I] COG1182 Acyl carrier protein phosphodiesterase ... can be seen here     ..................................................................................................................