Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance to gene:206 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=40 nt. Delta G=-11.50 kcal/mol
Anti-antiterminator: Size=40 nt. Delta G= -5.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGAATACGTTATGTGCCCAACCGTTATGTGGATCCATCGTTACGATTGTCGTAAGTGA
TGTCATTCCGTATACACCAAGTTCTTGGAATGTTTTTAAATCTGCTTGTATACCAGCA
CCGCCACTTGTGTCAGAACCAGCGATAGTAAGTGCTTTATTTAATGTCATtatgaaagccccc
tcaggtgatataatgaaaactatgttttcaccattatatcaatgttatgaataagtacaaagtgaaaagtagatgatttatgttaggaactatgtaaaat
cttgtatgtaggagacgaattATG
BA_0521
Gene: BA_0521 GI: 21397896 BI number: BA_0521 GOG: ------- Description: GAF, Domain present in phytochromes and cGMP-specific phosphodiesterase
T
t T G
t A A T
a T GC
a G CG
gT AT
cG TA
a G TA C
g A | G C A
aT GT A A
gC CG CG
gC TA AT
a A AT T T
t T CG A C
gC | T T T
tG | C GT
| T C A CG
aT T T CG
tA AT TA
gC GC TA
tG GC AT
tA TG CG
TTTTTAAATCTGCTTGTATACCAGCACCGCCACTTGTGTCAGAACCAGCGATAGTAAGTGCTTTATTTAATGTCATtatgaaagccccctcaggtgatataatgaaaactatgttttcaccattatatcaatgttatgaataagtacaaagtgaaaagtagatgatttatgttaggaactatgtaaaatcttgtatgtaggagacgaattATG
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