Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO1
Characteristics of the secondary structures
Terminator: Distance to gene:89 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-10.00 kcal/mol
Antiterminator: Size=65 nt. Delta G= -5.40 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G=-11.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aatccagtaacaaacaagaaccctaaaaccgcgctagaataggaATGTATAAAAAAATTTATAGCTCCATAGAACA
AAAAAGAAGGTTCCCTTGTGAGAGTAGGGTTCCCTCCTTTTTCTTTGCTACCGATAAT
GATGCGTTATGTTAActtaacctgtataggatattcattaccccaaagtaattaaaatatgctttgggttttgtattttccaagataag
gtgtaaatatatctttacatttatactgtttttatataatctattagtaaagatatctttacattgcaggtgaaatgATG
BXA0060 --- BXA0061
Gene: BXA0060 GI: 21392746 BI number: GeneID:1158620 GOG: ------- Description: DNA-binding protein, (pXO1-40)
Gene: BXA0061 GI: 21392747 BI number: GeneID:1158621 GOG: ------- Description: hypothetical protein, (pXO1-41
a
a c
t c
t t
cg
At
| a
At
Ta
A Tg
G G G g
T A Ta
G G At
T T Ta
TA T t
CG G |
CG C |
CG G |
| T T |
| T At
| C Gc
| C Ta
T C At a
T T At a a
GC Ta t a
GC | c t t
AT A c a a
AT G c at
GT C c tg
AT C a gc
AT A a at
A C Ta at
AT Cg at
AT Gt cg
AT Ta cg
CG Ta cg
ttttgtattttccaagataaggtgtaaatatatctttacatttatactgtttttatataatctattagtaaagatatctttacattgcaggtgaaatgATG
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