Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO1
Characteristics of the secondary structures
Terminator: Distance to gene:102 nt. Distance to run of Ts=1 nt. Size=38 nt. Delta G=-10.90 kcal/mol
Antiterminator: Size=17 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aatataaacgtgctgaacttaatacgaacgaaaaactgtgtattaatcacccacatgatcgcctctcaatcaataaccaaccccttacgaacaagaaacc
aatcacattcatcgcactcacctaatcaccggtcagttaatatatttaagttgcaatcactcatataaattgagtggtgattgagtggttggttttgtta
tgttcaatctagtcttgctcagtcaattaatcaccagtcagctgtatgattttagttcgtatttctaaagatgggtaaccagtgattgggcggttgagag
GTG
BXA0071
Gene: BXA0071 GI: 21392757 BI number: GeneID:1158631 GOG: ------- Description: hypothetical protei
ag
g t
tg
tg
at
a g
a a
t t
a |
t |
at
a cg
t a ta
a a cg
t t at
at cg
cg tg
ta at
cg at
at cg
gttttgttatgttcaatctagtcttgctcagtcaattaatcaccagtcagctgtatgattttagttcgtatttctaaagatgggtaaccagtgattgggcggttgagagGTG
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