Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO1
Characteristics of the secondary structures
Terminator: Distance from promoter:79 nt. Distance to gene:23 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-11.10 kcal/mol
Antiterminator: Distance from promoter:35 nt. Size=53 nt. Delta G= -6.20 kcal/mol
Anti-antiterminator: Distance from promoter:8 nt. Size=36 nt. Delta G= -6.00 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TGGAAA-TACAAT. It has a score value of 63.59 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGGAAAGCAATCCAAGGTGGTTATGATACAATTCTAGCTCGATTCACAAAAGCATCAA
GTAATGCGGATGTAGATTCTTGGAACAAAAAATAAattttgattgaaaataagagggggcgtgttttatatagc
tcccttcttttaaaacataaggaggtactatgATG
BXA0091
Gene: BXA0091 GI: 21392777 BI number: GeneID:1158651 GOG: ------- Description: hypothetical protein, (pXO1-65
Aa
A t
T t
At
At
A g
A a
At
At
AG Cg
A T | a
C A A a
TA A a
AT G a t
CG Gt t a
GC Ta t t
A G Ta ta
A G Cg gt
A A Ta ta
AT Tg g |
CG A g cg
AT G g gc
C A A g gt
T G Tg gc
TA Gc gc
AT Tg gc
GT At at
tcttttaaaacataaggaggtactatgATG
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