                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:103 nt.     Distance to run of Ts=0 nt.   Size=40 nt.     Delta G=-16.50 kcal/mol
Antiterminator: Size=26 nt.     Delta G= -3.84 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGGCGAGCAATTAAAAAAGTAAactttttaaatgtagatagctggttacaggcgcttaatccgacgaaagaagatctattctct
ttaacgggtgtgagtgtatcttaatgagtaatttgcaaaactatgtaaaagtgtatatgcagagggaatgacagaaatctgtagttaaaaacgactatga
atttctgtctttttattttattgatgaacaaaaagaatatctaaatagaagtataaaaagtttaatggaagtatctgttccatatataataaacagtata
caaggagtggggaataATG

    BXA0099 --- BXA0100 --- BXA0101 Gene: BXA0099     GI: 21392785     BI number: GeneID:1158659     GOG: -------     Description: hypothetical protein, (pXO1-70) Gene: BXA0100     GI: 21392786     BI number: GeneID:1158660     GOG: -------     Description: hypothetical protein Gene: BXA0101     GI: 21392891     BI number: GeneID:1158777     GOG: -------     Description: conserved hypothetical protein, (pXO1-71/72            aa           a  a           a  c            tg            ta            gc            at ga        ta t  c       gt a  a      t  g a  g      c  a g  a       ta g  a       at g  a       at at        at gc        gc at        at cg        cg gt        at ta        gc             tttttattttattgatgaacaaaaagaatatctaaatagaagtataaaaagtttaatggaagtatctgttccatatataataaacagtatacaaggagtggggaataATG     ..................................................................................................................