Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO1
Characteristics of the secondary structures
Terminator: Distance from promoter:114 nt. Distance to gene:116 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-12.00 kcal/mol
Antiterminator: Distance from promoter:51 nt. Size=69 nt. Delta G=-13.83 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGAAG-TAAACT. It has a score value of 62.25 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAAGTTTTAATTCAACAGGTAAACTTCTTAGAACCACGACAATTTAAAGTGCAGGT
AAACAAATATGCACAAATTGTAACACCAATTGCACAAATTCCACATGGACAAGAAGAA
GTACCTGTGGATTAAgaaaaaatgagggttgtggaagaaaaaacacaacccttttataaaaaagaaagagtacctaaatttatttattg
aatattcataattttctgatataataaaccatagttaaatgaaatttgtatatagcgctaaaatgaatatggaggaatacaaATG
BXA0113 --- BXA0114
Gene: BXA0113 GI: 21392797 BI number: GeneID:1158672 GOG: ------- Description: hypothetical protein, (pXO1-83)
Gene: BXA0114 GI: 21392798 BI number: GeneID:1158673 GOG: ------- Description: conserved hypothetical protein, (pXO1-84
AA
G G
A A
A A
CG
AT
| A
GC
GC
T |
AT
CG
AT
CG
CG
TA
| T
T T
A A
A A
A g
C a
A a
C a
G a aa
Ta g a
Ta a a
At a a
| g g a
A a gc
Cg ta
Cg gc
A | ta
Cg ta
At gc
At gc
Tg gc
ttttataaaaaagaaagagtacctaaatttatttattgaatattcataattttctgatataataaaccatagttaaatgaaatttgtatatagcgctaaaatgaatatggaggaatacaaATG
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