                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:158 nt.     Distance to run of Ts=3 nt.   Size=34 nt.     Delta G=-18.50 kcal/mol
Antiterminator: Size=35 nt.     Delta G= -5.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttacctaataataaaatgccactgaatattaaattttaataggggtcacaagacccaaaaaagaaaattgtacgttaaggaatatttttacataaaaagg
tgattctttatatttaaagaatcacctttttatattttttcaattctcttacttccagagCTAAGATGGTTGGATTTCACCTT
TAATTGCACGAATCCTCTTAATTGGGTATTTTTCTTCAAGTAAATGCTCTTGTTTTAG
CCTGGTTAAAATATCATCTTCATTGATGCTCTTAATGATTGTTTCTAAATTTACTACT
GTTG

    BXA0161 Gene: BXA0161     GI: 21392837     BI number: GeneID:1158720     GOG: -------     Description: hypothetical protei at c  a       at a  a      t  t ta        at ta        ta ta        ta tg        ta tg        cg at        ta |  g       ta ta        at at        gc at        ta gc        gc gt        gc at        at at        at ta        at             ttatattttttcaattctcttacttccagagCTAAGATGGTTGGATTTCACCTTTAATTGCACGAATCCTCTTAATTGGGTATTTTTCTTCAAGTAAATGCTCTTGTTTTAGCCTGGTTAAAATATCATCTTCATTGATGCTCTTAATGATTGTTTCTAAATTTACTACTGTTG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO1                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:169 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-16.70 kcal/mol Antiterminator: Size=35 nt.     Delta G= -5.70 kcal/mol Anti-antiterminator:   Size=38 nt.     Delta G= -9.10 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case ttacctaataataaaatgccactgaatattaaattttaataggggtcacaagacccaaaaaagaaaattgtacgttaaggaatatttttacataaaaagg tgattctttatatttaaagaatcacctttttatattttttcaattctcttacttccagagCTAAGATGGTTGGATTTCACCTT TAATTGCACGAATCCTCTTAATTGGGTATTTTTCTTCAAGTAAATGCTCTTGTTTTAG CCTGGTTAAAATATCATCTTCATTGATGCTCTTAATGATTGTTTCTAAATTTACTACT GTTG     BXA0161 Gene: BXA0161     GI: 21392837     BI number: GeneID:1158720     GOG: -------     Description: hypothetical protei ca a  a cg        aa ta       g  t gc       g  a gc        at        at gc        at       t  t |  a       tt        at |  a       tt        ta g  a       gt        ta a  a       ca        ta t  a      |  c       cg a  a       aa        ta a  g       tt        ta ta        ga        at ta        ta        gc ta        ta        ta ta        aa        gc at        aa        gc at        ag        at                         ttttatattttttcaattctcttacttccagagCTAAGATGGTTGGATTTCACCTTTAATTGCACGAATCCTCTTAATTGGGTATTTTTCTTCAAGTAAATGCTCTTGTTTTAGCCTGGTTAAAATATCATCTTCATTGATGCTCTTAATGATTGTTTCTAAATTTACTACTGTTG     ..................................................................................................................