Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO2
Characteristics of the secondary structures
Terminator: Distance to gene:37 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G=-18.80 kcal/mol
Antiterminator: Size=43 nt. Delta G= -7.40 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G= -8.86 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTTCTGCCTTAACAAGTTGGACTGGAAAGTTACAAGGACTTGGTATAGCGGTTATTAT
TTTCTGTGTATGTATTATTGCCTTCATGTTCATGTTCGGCGAAGGACCGAGCCGAACA
GCGAAAAAATGGTTACTGTACATTGTTGTTGGTGGCGTTCTTTTATGGGGAGCAGGAA
CTTTCGCAAGTACAGTTCAAGGCGTTACAGCTGGTTTCTAAgaaacacactggaagaggagcttactaat
tgtgggcttctcttttgttttaaaaaaaatcctatacatgaaatgaggttaagagaGTG
BXB0016
Gene: BXB0016 GI: 21392909 BI number: GeneID:1158794 GOG: ------- Description: conserved domain protein, (pXO2-17
AG
C T
A T A
T C T A
G A Cg
A A Ta
A G Ta
CG Ta
GC Gc
CG | a
T T Gc a
T T Ta a t
T A C | t t
C C Gc cg
A A At at
A G Cg tg
G | | g tg
GC | a cg
AT | a gc
CG | g at
G G A a gt
AT T g gc
GT T g at
GT G a gc
GC Cg at
GT Gc at
TA Gt gt
tgttttaaaaaaaatcctatacatgaaatgaggttaagagaGTG
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