Gene putatively regulated by attenuation in B_anthracis_A2012_pl-pXO2
Characteristics of the secondary structures
Terminator: Distance from promoter:114 nt. Distance to gene:31 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-19.20 kcal/mol
Antiterminator: Distance from promoter:79 nt. Size=39 nt. Delta G= -4.10 kcal/mol
Anti-antiterminator: Distance from promoter:40 nt. Size=57 nt. Delta G= -6.53 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaga-tagtat. It has a score value of 77.64 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgagatataaaatatctcttcttagtatagttaattagagtagatttgtaaagatagaaacccttatttaagtgcatttttaggcatggttaagtatgg
atttttctgcctttatatataatttagggaagtctatttatctaggtgagcagtgatatagctgctcacctttttttgttgtcaaaaatcagtggaaagg
aggttcaacATG
BXB0039
Gene: BXB0039 GI: 21392931 BI number: GeneID:1158816 GOG: ------- Description: plasmid replication protein, (pXO2-38
t
a g
t g
g a
at
at
t t
t t
gt
gc
t | gg
at a g
cg ta
gc ta
gc tg
at at
| t | c ta
t t at a t
t a ta g a
t t at tg
t a t t gc
t t at at
a a ta cg
c t at gc
g a t c at
ta t t gc
gt ta ta
at cg gc
at cg gc
ta gt at
ttttttgttgtcaaaaatcagtggaaaggaggttcaacATG
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