Gene putatively regulated by attenuation in B_anthracis_Ames
Characteristics of the secondary structures
Terminator: Distance to gene:193 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-19.90 kcal/mol
Antiterminator: Size=56 nt. Delta G= -5.29 kcal/mol
Anti-antiterminator: Size=30 nt. Delta G= -3.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ACATGAAACAGAAGATGAAAAATATATGTATAGCTGGATTGAAGAGGGATCATATACT
GTGAAATAAataaaaagaggcATGCTCAATAACGGAGCATGCCTCTTTTATGGAATCGACATG
TATAATAATACCAAAAAAAGTTATAGAAAGATATATAGAAAGGATGATCAAGATAATG
CGTATTCATAAgaatttctacttatttcgacaaagattaatgtggcaattttcagtttgaaaatttgtatttttctgattctatatataata
taattgttggggaactaaggggggaatttATG
BA0244
Gene: BA0244 GI: 30260421 BI number: BA0244 GOG: ------- Description: major facilitator family transporte
A
T C
A T
TG
AT
CG
TA
A A
G A
G T
G A
A A
G G a
A A A t
A G A a A
G G G a T A
TG T a A C
TA T a A G
AT A a CG
GC G g TA
G A G a CG
T | Tg GC
C | Cg TA
G | Gc AT
AT A | cG
TA TA gC
AT AT gC
TA TG aT
GC GC gC
TTTTATGGAATCGACATGTATAATAATACCAAAAAAAGTTATAGAAAGATATATAGAAAGGATGATCAAGATAATGCGTATTCATAAgaatttctacttatttcgacaaagattaatgtggcaattttcagtttgaaaatttgtatttttctgattctatatataatataattgttggggaactaaggggggaatttATG
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