Gene putatively regulated by attenuation in B_anthracis_Ames
Characteristics of the secondary structures
Terminator: Distance to gene:125 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G=-13.60 kcal/mol
Antiterminator: Size=40 nt. Delta G= -9.30 kcal/mol
Anti-antiterminator: Size=63 nt. Delta G=-14.79 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAGTACTGTACACACAAGCTAACCGAATTAAAGTGCATTCACCAGACAAACTAATGAT
TAATTTAGATGGTGAATACGGTGGAGATGCACCGATGGAATTCGAAAATATATATCAT
TGTCTGGAACTATTTGTTCCTGAACATCAAGAGGATGCCCTGTAAaggcatcctttttattatatag
aggaattgtaaattggaagttagtttgattttcatggtatttttacaattcgtttattttatatccatactttattgatacactggaggagataagagac
gagaggtagggtgtgctATG
BA0324
Gene: BA0324 GI: 30260494 BI number: BA0324 GOG: ------- Description: haloacid dehalogenase/epoxide hydrolase family protei
GA
A T
G G
GC
TA
GC
GC
CG
| A
| T
| G
| G
| A
| A
| T
| T T
| C A T
| G T T
| A CG
| A AT
| A AT
| A GC
| T GC
| A | T
AT | G
TA | A
AT | A
| A | C T
AT | A G A
GC | T T A
TA | C C a
GT | A Cg
G T TA Cg
T G CG Gc
AT TA Ta
GC G G At
AT TG Gc
TG TA Gc
TG AT At
TA CG Gt
tttattatatagaggaattgtaaattggaagttagtttgattttcatggtatttttacaattcgtttattttatatccatactttattgatacactggaggagataagagacgagaggtagggtgtgctATG
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