Gene putatively regulated by attenuation in B_anthracis_Ames
Characteristics of the secondary structures
Terminator: Distance to gene:130 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-16.60 kcal/mol
Antiterminator: Size=68 nt. Delta G= -4.80 kcal/mol
Anti-antiterminator: Size=27 nt. Delta G= -4.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATCATACATCCCAATCTTCACAAGCTCAGTCAGTATCAATACAGGACATTACAAATAT
GTCTCTTCAAATGCAAAAACTTGTTGACGAATTAGAAAAGTCCGCAACTCAATTTAAA
ATTAAAAACTTGTAAgtatatgaaagaccagctaatttagttggtctttctattttaattacacattcagatttacttatataataact
gtcctccaaaaaaataaaggattctgacaatttatgactaataacagaaataaggggcaacatttgtaaaatatatttttgactgggggttttgtATG
BA0368
Gene: BA0368 GI: 30260535 BI number: BA0368 GOG: ------- Description: amino acid ABC transporter, ATP-binding protei
AT
A T
A A
A A
TA
TA
TA
| C
AT
AT
CG
| T
| A
TA
Cg
At
| a
| t
| a
At
Cg
| a
G a
C a t
A Cg a t
T G Ta at
T A Gc ta
A A A c cg
A A A a gt
G A A g at
CG A | cg
AT Gc cg
GC At at
T C Ta gc
TG Ta at
GC At at
TA At at
TA Gt gc
tattttaattacacattcagatttacttatataataactgtcctccaaaaaaataaaggattctgacaatttatgactaataacagaaataaggggcaacatttgtaaaatatatttttgactgggggttttgtATG
..................................................................................................................