Gene putatively regulated by attenuation in B_anthracis_Ames
Characteristics of the secondary structures
Terminator: Distance to gene:194 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-14.40 kcal/mol
Antiterminator: Size=40 nt. Delta G= -7.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AATTATGGCCGCTATCCGGTTAATATTTATAACCGTGTGATTCGCTTCATTTTAACAT
TTGTTTTACCATTTGCGTTTGTCGGAGTGTATCCGGCAGCGTACTTTTTAAGAAAAAC
AGAGTGGAATAGCTATGCATTTGCAACACCGCTCGTTGGTGTTATCTGTTTTACAATT
GCAATCACTCTTTGGAACCAAGGGGTAAAAAGGTACCGTGGTGCTGGCAATTAAttataa
aagctcgtttgtttctaagggataaatctaatggtcacctcatacatataaaatgaggtggaggacATG
BA0535
Gene: BA0535 GI: 30260693 BI number: BA0535 GOG: ------- Description: potassium channel protein, putativ
CC
A A
T T
T T
T T G
TG T T
GC G A
TG AT
T T GC
T T GC
AT CG
CG TG
AT GC
A C T |
T G TA
TG TG
TA GC
TG CG
AT GT
CG TA
CTTTTTAAGAAAAACAGAGTGGAATAGCTATGCATTTGCAACACCGCTCGTTGGTGTTATCTGTTTTACAATTGCAATCACTCTTTGGAACCAAGGGGTAAAAAGGTACCGTGGTGCTGGCAATTAAttataaaagctcgtttgtttctaagggataaatctaatggtcacctcatacatataaaatgaggtggaggacATG
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