Gene putatively regulated by attenuation in B_anthracis_Ames
Characteristics of the secondary structures
Terminator: Distance to gene:98 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-14.70 kcal/mol
Antiterminator: Size=76 nt. Delta G= -9.81 kcal/mol
Anti-antiterminator: Size=47 nt. Delta G= -6.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGAAAAATTAATGATGATCCGAAAAAATAACGGTGAGCTTGAAAAGGTTGCAGTCGGC
ATCAGTGGAAATATAAGATTAGTAAATGTAGTTGTTGGGCAGCAAATTCATACAGATA
CATTATTAGTTAGGTTGGAAGATGATTTATTAATTACAGGTTGTGAATAAtgagagatgtgta
gatatgactacacatcttttttgttctatatattgcaaaagacacattgttttttcacaaatcgcacacaagtttttgatatgctccttgtagaagatag
ggttagggaggaaataatacaATG
BA0563
Gene: BA0563 GI: 30260720 BI number: BA0563 GOG: ------- Description: lipoprotein, putativ
T
T T
A A
G T
T T
A A
G A
A T
A T
G A
GC
TA
TG
G G
GT
C AT
G A TG
A A T T
C A G G
GT A |
GT TA
GC TA
TA AT
| T TA
TA TA
GC At at
TA Cg t g
TG | a a a
G A A g gc
AT T a at
TA A g ta
GC G a gc
TA At ta
A | Cg gc
AT At ta
AT Tg at
TA At gc
GT | a at
AT Cg gt
TA Ta at
tttgttctatatattgcaaaagacacattgttttttcacaaatcgcacacaagtttttgatatgctccttgtagaagatagggttagggaggaaataatacaATG
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