Gene putatively regulated by attenuation in B_anthracis_Ames
Characteristics of the secondary structures
Terminator: Distance to gene:76 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -8.10 kcal/mol
Antiterminator: Size=71 nt. Delta G= -5.51 kcal/mol
Anti-antiterminator: Size=34 nt. Delta G= -5.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAACTGAAACAAGCATTTTATCTAGCATTGAACCACTTGTAGCAGCTATCGTTTCAAT
CGCTTGGCTGAATGAATCCTTTGGAGCCTATCAATTACTAGGCGGCCTATGTATCGTT
CTTTCTGTTATTTTCTTAACGATGCCGCAAAAAGAAAATGAAGCTACCTTTTCAACTG
AACAAATATAAaaaatgtcaaaagtggtcgtacaaaacttacgacctcttttgacgttttaaaggaattgtcccgctttctggcaaatacaa
ttacactaacaatcaaaattaggagtgtggcaccATG
BA0580
Gene: BA0580 GI: 30260737 BI number: BA0580 GOG: ------- Description: lipoprotein, putativ
AC
A T
CG
TA
TA
T C
T A
C A
C A
A T
T A
C T
G A
A A
A a
G a
T a
A a
A t
TG A g
A C At
GC Gc
CG A a
| C A a
| A A a
A A A a
A A A | a
TA Cg a a
TA Gt a c
CG Cg c t
TA Cg at
TA Gt ta
TA T | gc
TA A | cg
AT Gc ta
TG Cg gc
TA At gc
tcttttgacgttttaaaggaattgtcccgctttctggcaaatacaattacactaacaatcaaaattaggagtgtggcaccATG
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