                                                                        Gene putatively regulated by attenuation in B_anthracis_Ames

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:212 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G= -9.20 kcal/mol
Antiterminator: Size=37 nt.     Delta G= -9.10 kcal/mol
Anti-antiterminator:   Size=39 nt.     Delta G= -4.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACAGCAAGCCTCCTGTTTTCAGTTGAGACAATACTTAAACTACAGGATGGTGAAATAA
CTCTAATTTCATCACCCTTTTTTAATTTTGTTGGTAGCATctatttcacctctttaaatgaaagaatatt
tagacttaaaaaatattttagcatatgaaataaagtgaaagtgaattattttttgaaatggagttttcctgatttttcagcagacagacagaggtttttt
ttgatatgataggaaaagtgatttattataagtagtatttaatatctataacatttgaaaggtgtgcaagacGTG

   ق --- argS Gene: BA5612     GI: 30265387     BI number: BA5612     GOG: COG4506     Description: conserved hypothetical protein Gene: argS-2     GI: 30265386     BI number: BA5611     GOG: COG0018     Description: arginyl-tRNA synthetas   g a  a       AA a  c      C  T cG       A  A gT        GC tG        AT         T g  T       GT       C  C t  C       TA       A  T gC        TA       A  A gT       G  A       TA |  G      A  C       AT |  T      C  T       AT aT       T  |       AT aT       T  |       GC aT       T  |       TA gC        TA        GT tA        GC        GC tG        TA        TA t  T       CG       A  C aT        CG        GC cG        TA        GC                         TTTTTTAATTTTGTTGGTAGCATctatttcacctctttaaatgaaagaatatttagacttaaaaaatattttagcatatgaaataaagtgaaagtgaattattttttgaaatggagttttcctgatttttcagcagacagacagaggttttttttgatatgataggaaaagtgatttattataagtagtatttaatatctataacatttgaaaggtgtgcaagacGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG4506 Uncharacterized protein conserved in bacteria ... can be seen here [J] COG0018 Arginyl-tRNA synthetase ... can be seen here     ..................................................................................................................