Gene putatively regulated by attenuation in B_anthracis_Ames_0581

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:194 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-14.40 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -7.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AATTATGGCCGCTATCCGGTTAATATTTATAACCGTGTGATTCGCTTCATTTTAACAT
TTGTTTTACCATTTGCGTTTGTCGGAGTGTATCCGGCAGCGTACTTTTTAAGAAAAAC
AGAGTGGAATAGCTATGCATTTGCAACACCGCTCGTTGGTGTTATCTGTTTTACAATT
GCAATCACTCTTTGGAACCAAGGGGTAAAAAGGTACCGTGGTGCTGGCAATTAAttataa
aagctcgtttgtttctaagggataaatctaatggtcacctcatacatataaaatgaggtggaggacATG

    GBAA0535


Gene: GBAA0535     GI: 47525805     BI number: GBAA0535     GOG: COG1226     Description: potassium channel protein, putativ


 CC
A  A
T  T
T  T
T  T        G
 TG       T  T
 GC       G  A
 TG        AT
T  T       GC
T  T       GC
 AT        CG
 CG        TG
 AT        GC
A  C      T  |
T  G       TA
 TG        TG
 TA        GC
 TG        CG
 AT        GT
 CG        TA
            CTTTTTAAGAAAAACAGAGTGGAATAGCTATGCATTTGCAACACCGCTCGTTGGTGTTATCTGTTTTACAATTGCAATCACTCTTTGGAACCAAGGGGTAAAAAGGTACCGTGGTGCTGGCAATTAAttataaaagctcgtttgtttctaagggataaatctaatggtcacctcatacatataaaatgaggtggaggacATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component ... can be seen here

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