                                                                        Gene putatively regulated by attenuation in B_anthracis_Ames_0581

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-21.40 kcal/mol
Antiterminator: Size=67 nt.     Delta G=-10.20 kcal/mol
Anti-antiterminator:   Size=38 nt.     Delta G= -5.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAGTTCGCAGGATAATTTAGAACAAGCTAATTAAaagcttaattaaaagggatataagtatagtaagccttgtgc
gtctagggagcgcacaaggctttttcttttgtgcaaagtgtacattcttttttgtatgagaatgtaatggatgcggaaaatatgtgtagatcttttaaaa
atgtgaacgaaatgttcaaaaaaatgtatgagatttcattgacacatatgaataggcgctcatataataaaagtataagatatatgaatagttgttcata
tgttcaaataaagaggtgagctataATG

    GBAA0593 --- GBAA0594 Gene: GBAA0594     GI: 47525871     BI number: GBAA0594     GOG: COG0640     Description: transcriptional regulator, ArsR family Gene: GBAA0595     GI: 47525872     BI number: GBAA0595     GOG: COG2217     Description: heavy metal-transporting ATPas            aa           a  g           a  g            tg            ta            at           |  a            at            ta            ta            cg            gt           a  a           a  |           A  |            At            Ta CA        Tg A  A       At A  G      A  a GC        Ta        ag AT        Cg       t  g TA       |  c       cg TA        Gc        ta T  T       At       |  g G  T       At        gc T  A       Cg        cg A  A       At        gc a  a      |  g       ta t  |      |  c       gc a  |      |  g       ta ta        At        ta cg        Gc        cg gc        At        cg at        Ta        gc gt        Tg        at ta        Tg        at                         tttcttttgtgcaaagtgtacattcttttttgtatgagaatgtaatggatgcggaaaatatgtgtagatcttttaaaaatgtgaacgaaatgttcaaaaaaatgtatgagatttcattgacacatatgaataggcgctcatataataaaagtataagatatatgaatagttgttcatatgttcaaataaagaggtgagctataATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0640 Predicted transcriptional regulators ... can be seen here [P] COG2217 Cation transport ATPase ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_anthracis_Ames_0581                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:202 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-15.50 kcal/mol Antiterminator: Size=67 nt.     Delta G=-10.20 kcal/mol Anti-antiterminator:   Size=21 nt.     Delta G= -3.50 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case AAGTTCGCAGGATAATTTAGAACAAGCTAATTAAaagcttaattaaaagggatataagtatagtaagccttgtgc gtctagggagcgcacaaggctttttcttttgtgcaaagtgtacattcttttttgtatgagaatgtaatggatgcggaaaatatgtgtagatcttttaaaa atgtgaacgaaatgttcaaaaaaatgtatgagatttcattgacacatatgaataggcgctcatataataaaagtataagatatatgaatagttgttcata tgttcaaataaagaggtgagctataATG     GBAA0593 --- GBAA0594 Gene: GBAA0594     GI: 47525871     BI number: GBAA0594     GOG: COG0640     Description: transcriptional regulator, ArsR family Gene: GBAA0595     GI: 47525872     BI number: GBAA0595     GOG: COG2217     Description: heavy metal-transporting ATPas            ta           g  a           a  g            tc            ac            tt           |  t            gg            at            ag            tc            ag           t  t           a  |           g  |            gc            gt            aa            ag           a  g            a            t           |              t        ag            a       t  g            a        cg   T        t        ta A  G       t       |  g a  A      |         gc t  A      |         cg a  a      |         gc ta        c        ta cg        g        gc gc        a        ta at        a        ta gt        A        cg ta        A        cg                         ctttttcttttgtgcaaagtgtacattcttttttgtatgagaatgtaatggatgcggaaaatatgtgtagatcttttaaaaatgtgaacgaaatgttcaaaaaaatgtatgagatttcattgacacatatgaataggcgctcatataataaaagtataagatatatgaatagttgttcatatgttcaaataaagaggtgagctataATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0640 Predicted transcriptional regulators ... can be seen here [P] COG2217 Cation transport ATPase ... can be seen here     ..................................................................................................................