Gene putatively regulated by attenuation in B_anthracis_Ames_0581
Characteristics of the secondary structures
Terminator: Distance from promoter:34 nt. Distance to gene:115 nt. Distance to run of Ts=0 nt. Size=37 nt. Delta G=-13.40 kcal/mol
Antiterminator: Distance from promoter:14 nt. Size=39 nt. Delta G= -5.60 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G= -5.30 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttcaat-tacatt. It has a score value of 64.26 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttcaatcattcgtcagagaaggttacattacgttatataggggtaaaccaagatgcaatggataaagcaatgactaggtttaaaatctaagcattgcttt
ttctttttaaaactatacacttactcataaatttcatactgtgtaactcaaaagggaaagtttaattaagtcaatgataccaagggatttggcgaagggg
tcagttacacacaatataagatATG
GBAA0459
Gene: GBAA0459 GI: 47777817 BI number: GBAA0459 GOG: ------- Description: hypothetical protei
a
t t
a a
tg
tg
g g
cg
at
ta
t |
a |
c | ga
a | g t
ta t a a
ta a a t a
gc a a ta
gc cg ta
a a gc gt
a a ta gc
g | | a at
a | | t ta
g | | g c a
a | a a a g
cg gc gc
ta at ta
gt a a at
cg cg at
| c cg cg
ta at gc
ta at at
at at at
cg ta at
ttctttttaaaactatacacttactcataaatttcatactgtgtaactcaaaagggaaagtttaattaagtcaatgataccaagggatttggcgaaggggtcagttacacacaatataagatATG
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