Gene putatively regulated by attenuation in B_anthracis_Ames_0581

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=1 nt.   Size=23 nt.     Delta G= -8.20 kcal/mol
Antiterminator: Size=75 nt.     Delta G=-16.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAACTTTTTCGGCGATGTAGGTCGCGAAATGAAAAAAGTAAGTTGGCCTAAAAAAGAT
GAATTACTCCGTTCAACAGCGACTGTTATCGCTACAGTTGTCTTCTTTGCGATTTTCT
TCGCAGTAGTTGATATGGGCATTTCTTCTTTAATTCGGTTAATTCTTGGTTAAttcttgaa
taagaagcacttatccatgatataatgttatttataagaactgtgtaaaagcccggtgaacgggttttttcatttgcgcaaaaaaatgtacgtcagggag
ggaaggacgctcgtcctaaatgaATG

    GBAA0092


Gene: nusG     GI: 50196907     BI number: GBAA0096     GOG: COG0250     Description: transcription antitermination protein Nus


  G
A  C
C  G
 AA
 AC
C  T
T  |
 TG
 GT
 CT
C  A
 TT
 CC
 A
 T
 T
A
A
G
 T
 A
 G
 A
A
A
A
A  |
 A         C
 T       T  G
 C       A  C
 C       T  T
 G        TA
 G        GC
T         TA
T         CG
 G        AT
 A        GT
 A        CG
 T        GT
            CTTCTTTGCGATTTTCTTCGCAGTAGTTGATATGGGCATTTCTTCTTTAATTCGGTTAATTCTTGGTTAAttcttgaataagaagcacttatccatgatataatgttatttataagaactgtgtaaaagcccggtgaacgggttttttcatttgcgcaaaaaaatgtacgtcagggagggaaggacgctcgtcctaaatgaATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[K] COG0250 Transcription antiterminator ... can be seen here

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