Gene putatively regulated by attenuation in B_anthracis_Ames_0581_pl-pXO1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:92 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G= -9.90 kcal/mol
Antiterminator: Size=76 nt.     Delta G=-13.61 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

aagtggaggattaaacATGGTCGTACTTGAAAATACAACTGATATAACTGTGAGTACAAATAAC
GAAGTTAGATTTTTCAAAGGAGTTTTTTGGGGATTAATATTCGTAGTTCCTTTTTGGA
GTATTATAATAGCCGTATTCATTTGGCTGTGTAAATAAtaatcaacatatcaaaaacgcaaagggttgtttg
tccgtttgcgtttttgatatgccagcaaccgtgcgtagcaaagggcggtagaaggttttaatcctactttctgttataatatatccaaagaaattaggtg
attataATG

    GBAA_pXO1_0026


Gene: GBAA_pXO1_0026     GI: 47566348     BI number: GBAA_pXO1_0026     GOG: -------     Description: conserved hypothetical protein, (pXO1-18


 TC
T  A
A  T
T  T
 GT
 CG
 CG
 GC
 AT
 TG
 AT
|  G
|  T
|  A
A  A
 TA
 AT
 TA
 TA
 At
 Ta
G  a
 At
 Gc
|  a
|  a
|  c
|  a
|  t
|  a
|  t
|  c
|  a
|  a       tt
|  a      g  t
|  a      t  g
|  a      t  t
 Gc        gc
 Tg        gc
T  c      g  g
 Ta        at
 Ta        at
 Ta        at
 Cg        cg
 Cg        gc
 Tg        cg
            tttttgatatgccagcaaccgtgcgtagcaaagggcggtagaaggttttaatcctactttctgttataatatatccaaagaaattaggtgattataATG
    ..................................................................................................................