Gene putatively regulated by attenuation in B_anthracis_Ames_0581_pl-pXO1
Characteristics of the secondary structures
Terminator: Distance to gene:162 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-14.80 kcal/mol
Antiterminator: Size=42 nt. Delta G= -9.10 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G= -7.16 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAAAAAAAAGACAACAAAAACCCCGCGCTTCACCGACCAAAGTACAAGCGTGGGTCTA
AAAGAAAAAGATAAtgcataataacagccaccttgacagtagcagttatgggacgggatgttgacgcatctcgtcttttttagtttatgc
aattcagttaagtactatacttaagatatattggatatgcattcaatatatatctaatctacagtaaatataccatatttttattttttggtcaataaat
gaagaaaatagaactgttagaggaatgagaggtttctatattctttcattaaGTG
GBAA_pXO1_0187
Gene: GBAA_pXO1_0187 GI: 47566499 BI number: GBAA_pXO1_0187 GOG: ------- Description: hypothetical protein, (pXO1-100
G
A A
A A
A A
A A
TA
CG
TA
GT
| A
| A
| t
| g
| c a
| a t g
| t g c
| a a a
| a cg
| t at
| a gt
| a ta
| c t t
| a cg
| g cg ga
Gc | g t c
Gc | a tg
Ta | c gc
Gc a g ta
C | cg at
Gc cg gc
At g a gt
At at gc
Cg cg cg
A | at at
Ta at gc
Gc tg gt
tttttagtttatgcaattcagttaagtactatacttaagatatattggatatgcattcaatatatatctaatctacagtaaatataccatatttttattttttggtcaataaatgaagaaaatagaactgttagaggaatgagaggtttctatattctttcattaaGTG
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