                                                                        Gene putatively regulated by attenuation in B_anthracis_Ames_0581_pl-pXO2

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:37 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-18.80 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -7.40 kcal/mol
Anti-antiterminator:   Size=53 nt.     Delta G= -8.86 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTTCTGCCTTAACAAGTTGGACTGGAAAGTTACAAGGACTTGGTATAGCGGTTATTAT
TTTCTGTGTATGTATTATTGCCTTCATGTTCATGTTCGGCGAAGGACCGAGCCGAACA
GCGAAAAAATGGTTACTGTACATTGTTGTTGGTGGCGTTCTTTTATGGGGAGCAGGAA
CTTTCGCAAGTACAGTTCAAGGCGTTACAGCTGGTTTCTAAgaaacacactggaagaggagcttactaat
tgtgggcttctcttttgttttaaaaaaaatcctatacatgaaatgaggttaagagaGTG

    GBAA_pXO2_0016 Gene: GBAA_pXO2_0016     GI: 47566688     BI number: GBAA_pXO2_0016     GOG: -------     Description: conserved domain protein, (pXO2-17 AG C  T A  T        A T  C      T  A G  A       Cg A  A       Ta A  G       Ta CG        Ta GC        Gc CG       |  a T  T       Gc         a T  T       Ta       a  t T  A      C  |      t  t C  C       Gc        cg A  A       At        at A  G       Cg        tg G  |      |  g       tg GC       |  a       cg AT       |  a       gc CG       |  g       at G  G      A  a       gt AT       T  g       gc GT       T  g       at GT       G  a       gc GC        Cg        at GT        Gc        at TA        Gt        gt                         tgttttaaaaaaaatcctatacatgaaatgaggttaagagaGTG     ..................................................................................................................