Gene putatively regulated by attenuation in B_anthracis_Ames_0581_pl-pXO2
Characteristics of the secondary structures
Terminator: Distance to gene:163 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-18.20 kcal/mol
Antiterminator: Size=40 nt. Delta G= -5.03 kcal/mol
Anti-antiterminator: Size=35 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttatacaaggtatgcaagggtatacttacacgctatttttaacaatattattggttttgtgcggttatccttcttaaaagtggttcttcggattgaagaa
aaaggcgtagactaaaacattagtttacgccttttttgtattctgtaagaaacccattggctatatgaaaatttaataacgctcgccttactatttgttg
tttatgtgaatgggcttgggttagaaacttgttagcaggtatttagatcgtgagaaagtctagatacaaatttaaatttataagattggagagaagaacc
ATG
GBAA_pXO2_0033
Gene: GBAA_pXO2_0033 GI: 47566705 BI number: GBAA_pXO2_0033 GOG: ------- Description: hypothetical protein, (pXO2-34
a
g t
t g t
t a cg
c a ta
ta ta ac
ta cg a a
cg ta at
| t ta at
cg g a ta
tg g a cg
at t a at
| t g g gt
t c a g at
t t a c ta
gt a g gc
gc a t cg
cg t | gc
g g ta gc
ta cg at
gt ta at
ttttgtattctgtaagaaacccattggctatatgaaaatttaataacgctcgccttactatttgttgtttatgtgaatgggcttgggttagaaacttgttagcaggtatttagatcgtgagaaagtctagatacaaatttaaatttataagattggagagaagaaccATG
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