                                                                        Gene putatively regulated by attenuation in B_anthracis_Ames_0581_pl-pXO2

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:137 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-17.30 kcal/mol
Antiterminator: Size=45 nt.     Delta G= -6.00 kcal/mol
Anti-antiterminator:   Size=42 nt.     Delta G= -6.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGCTGCAATAAATGTGGGGGCGCTGCATGGCGTGTTGTCTGGCTTTCAACAGGGCGAC
GTACAATTACAATGGAATGGGTCTTTGTATATTGTCCAACGTGTGATGAACTCCGACG
ACAAAAGTACAAGTAAAGGAGGGGGGTATTCCCCTTCCTTTTTTCTTTTGATATATAT
ATATATATATAATTTCACATACCGCAAAGGTAGATAAATATAACCCAAgacttaaaagaggatg
aaaacaataatttgaaatgattttataggaattccatttaagggggctattaattcgtttttATG

    GBAA_pXO2_0090 Gene: GBAA_pXO2_0090     GI: 47566753     BI number: GBAA_pXO2_0090     GOG: -------     Description: hypothetical protein, (pXO2-67            AA           A  A            CG TT        AT T  G      |  A C  T      |  C TA       |  A GT       G  A G  A       CG G  T       AT T  T      |  A A  G      |  A        A AT       G  A      T  T GC        CG       G  T GC        CG        GC TA        TA        GC |  A       CG        GC |  C      A  G       GC A  G      A  G       GT AT       G  G       AT CG       T  G       GC AT       A  G       GC TG        GT        AT TA        TA        AT AT        GT        AT                         TTTCTTTTGATATATATATATATATATAATTTCACATACCGCAAAGGTAGATAAATATAACCCAAgacttaaaagaggatgaaaacaataatttgaaatgattttataggaattccatttaagggggctattaattcgtttttATG     ..................................................................................................................