Gene putatively regulated by attenuation in B_anthracis_Ames_0581_pl-pXO2
Characteristics of the secondary structures
Terminator: Distance from promoter:86 nt. Distance to gene:78 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-12.30 kcal/mol
Antiterminator: Distance from promoter:70 nt. Size=27 nt. Delta G= -5.00 kcal/mol
Anti-antiterminator: Distance from promoter:23 nt. Size=55 nt. Delta G= -7.80 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttaaag-tataat. It has a score value of 67.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttaaagaattgtaagttgttgtataatggaatcaaaccatatgtaagatagtttccccgatatgaataaccagatattttatgtgtcctgtatattggct
gtaacctcaaaaagagcttgtagtgatttctacaagttctttttgcattgattactaatagcaagcattacaatgatatactaatattaagtttttttag
aaaggataggcggggagaaatATG
GBAA_pXO2_0100
Gene: GBAA_pXO2_0100 GI: 47566762 BI number: GBAA_pXO2_0100 GOG: ------- Description: hypothetical protein, (pXO2-73
t
t a
t t
tg
at
tg
at
| c
gc
at
cg
c |
a |
a |
t |
a |
a |
gt
ta a
at a a at
ta a a g t
at cg t t
gt ta gc
cg cg at
cg c c ta
| c at gc
c t at ta
c g tg ta
t t gt cg
ta ta gt
ta cg at
gc gt gc
tttttgcattgattactaatagcaagcattacaatgatatactaatattaagtttttttagaaaggataggcggggagaaatATG
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