                                                                        Gene putatively regulated by attenuation in B_anthracis_Ames_0581_pl-pXO2

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:86 nt.     Distance to run of Ts=1 nt.   Size=29 nt.     Delta G= -7.70 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -3.80 kcal/mol
Anti-antiterminator:   Size=29 nt.     Delta G= -5.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTTTCTCTAAAAAAGGTATTAAGTGGCTGCTGCCATTATCCAATAGAAATTTTCAAAG
TGGATTCCATGTTTTTTATTACAGCTATAACGGTATAGCGGAAAAAATGATTTTAATG
ATTAGTACAATCGTAGTTGTGTATGAACTGTATTCATATGGAATGGCAAGTTTTCAAT
TTGGAGCTTCAGGGATTTTAGAATCCTTTAAAGCGTTATTTAGTTAAggtcaaTCAAATA
TAAATATAAATAAAACGAAAAAGATCATGTGAAAAAGCATGGTCTTTTTTTAATGGAG
GAATTTTCATG

    GBAA_pXO2_0107 Gene: GBAA_pXO2_0107     GI: 47566768     BI number: GBAA_pXO2_0107     GOG: -------     Description: conserved hypothetical protei             T           T  C            TA            TA            GT            AT            AT            CG   G       G  G       TA T  T      G  A      T  G C  A      T  G       TA AT       A  C       TA AT        AT        AT GC        GT        GC TA        GC        GC AT        TA        GT TA       A  G       AT GT       T  |      |  T TG       A  |      C  A G  G       CG        TA TA        TG        TA TA        TA        CG GT        AT        GC                         GTTATTTAGTTAAggtcaaTCAAATATAAATATAAATAAAACGAAAAAGATCATGTGAAAAAGCATGGTCTTTTTTTAATGGAGGAATTTTCATG     ..................................................................................................................