Gene putatively regulated by attenuation in B_anthracis_str_Sterne
Characteristics of the secondary structures
Terminator: Distance from promoter:202 nt. Distance to gene:26 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G= -9.00 kcal/mol
Antiterminator: Distance from promoter:145 nt. Size=68 nt. Delta G= -5.25 kcal/mol
Nomenclature/Definitions
The most likely promoter is: atgata-tattat. It has a score value of 68.27 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
atgataatgatagcatgttaatatattatatattgaatacgtttagggggatgtattatgcatttatttgaagtagatagagagtgtacttataaaagtg
tagattacaaagttatttctgtattagacaacgatctattattagttgtacctaaagaagatttagcaaatgaaaaattcccgttacaaacttacgttat
tccagaacaaattgaataaacttattatccaaaagggcttttacatcaaagctctttttatttggttaaaaataatgaggtgatacaTTG
BAS0457 --- BAS0458
Gene: BAS0457 GI: 49183485 BI number: BAS0457 GOG: NOG08887 Description: phage minor structural protein
Gene: BAS0458 GI: 49183486 BI number: BAS0458 GOG: ------- Description: conserved domain protei
c
a a
a a
g a
a t
c t
cg
ta
ta
at
ta
ta
| a
g c
c t
a t
t a
t t
c t
a a
a t
a c
c c ca
a a a t
t a t c
t a ta
g a ta
cg ta
cg cg
cg gc
t c gt
t t gc
at at
at at
at at
ttatttggttaaaaataatgaggtgatacaTTG
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