Gene putatively regulated by attenuation in B_anthracis_str_Sterne
Characteristics of the secondary structures
Terminator: Distance from promoter:127 nt. Distance to gene:97 nt. Distance to run of Ts=3 nt. Size=28 nt. Delta G=-14.60 kcal/mol
Antiterminator: Distance from promoter:98 nt. Size=41 nt. Delta G= -8.10 kcal/mol
Anti-antiterminator: Distance from promoter:99 nt. Size=18 nt. Delta G= -3.60 kcal/mol
Nomenclature/Definitions
The most likely promoter is: atgagc-tatctt. It has a score value of 62.92 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
atgagctgtataaagtatatcatatcttttagtgtaacttatgtcactgttgtgcattctattgcaaagaaaaaacaatatcgtttattttcggtacatt
gaatgtatttaatttatttttagtgtgtggtcatctttgtggtcagtggtcaaatgagagtgagcattttatatgccactctcttcttatttgcatttct
attaaatcgtttgattaaagtaatacaaaatctcacttttaaaatattgtattaattggtatgatttacttaacttaagggggcgattttATG
BAS0461
Gene: BAS0461 GI: 49183489 BI number: BAS0461 GOG: ------- Description: hypothetical protei
g
a t
c g
tg
gt
gc
ta
| a t
g a t a
t t t t
tg ta
ta at
cg cg
tt ta gc
c t | g a |
tg at gc
at cg ta
cg ta gc
t g g g at
g t gc gc
gc ta at
ta gt gc
ttcttatttgcatttctattaaatcgtttgattaaagtaatacaaaatctcacttttaaaatattgtattaattggtatgatttacttaacttaagggggcgattttATG
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