                                                                        Gene putatively regulated by attenuation in B_anthracis_str_Sterne

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:194 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-14.40 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -7.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AATTATGGCCGCTATCCGGTTAATATTTATAACCGTGTGATTCGCTTCATTTTAACAT
TTGTTTTACCATTTGCGTTTGTCGGAGTGTATCCGGCAGCGTACTTTTTAAGAAAAAC
AGAGTGGAATAGCTATGCATTTGCAACACCGCTCGTTGGTGTTATCTGTTTTACAATT
GCAATCACTCTTTGGAACCAAGGGGTAAAAAGGTACCGTGGTGCTGGCAATTAAttataa
aagctcgtttgtttctaagggataaatctaatggtcacctcatacatataaaatgaggtggaggacATG

    BAS0503 --- BAS0504 Gene: BAS0503     GI: 49183531     BI number: BAS0503     GOG: COG1226     Description: potassium channel protein, putative Gene: BAS0504     GI: 49183532     BI number: BAS0504     GOG: COG1225     Description: bacterioferritin comigratory protei CC A  A T  T T  T T  T        G TG       T  T GC       G  A TG        AT T  T       GC T  T       GC AT        CG CG        TG AT        GC A  C      T  | T  G       TA TG        TG TA        GC TG        CG AT        GT CG        TA             CTTTTTAAGAAAAACAGAGTGGAATAGCTATGCATTTGCAACACCGCTCGTTGGTGTTATCTGTTTTACAATTGCAATCACTCTTTGGAACCAAGGGGTAAAAAGGTACCGTGGTGCTGGCAATTAAttataaaagctcgtttgtttctaagggataaatctaatggtcacctcatacatataaaatgaggtggaggacATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component ... can be seen here [O] COG1225 Peroxiredoxin ... can be seen here     ..................................................................................................................