                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:121 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-13.50 kcal/mol
Antiterminator: Size=47 nt.     Delta G= -6.10 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G=-14.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTTACGTCAGAAGAGAATGGTCGAACAAAGTGTAGAACCGTCTCAAGATGTCATTTGT
TCTTTGAAAATAGCAGAGGCGAAATATTTCTTTTTGTTGAAAGAAGCAAAGCGTCGTC
CTGTAAAAATGGAACAATGGTAAaaggttctgctttctaagcaggcctttttattttgttttttaagtgctgaggtattgttt
tatttagtgtatatgaaagagatgctgcatatgataactgttcttttttattgtcttgtcccatacaaatagatgtataggtcattcataaggaggaaaa
aATG

    BC0028 Gene: BC0028     GI: 30018299     BI number: BC0028     GOG: NOG08708     Description: SigmaK-factor processing regulatory protein Bof   T T  G G  A TA        AA TA       G  C TG       G  A TA        TA TA        AT CG       A  G |  C      A  G        c TA       A  T      t  t TA       A  A       ta TA       T  A       ta A  G      G  a       cg T  C       Ta        gc A  G       Cg        ta A  |       Cg        cg AT       T  t      t  g GC       G  t      t  c CG       C  c       gc GT       T  |       gt GC        Gt        at A  |       Cg        at GC        Gc        At AT        At        At CG        At        Ta GT        At        Gt                         tttgttttttaagtgctgaggtattgttttatttagtgtatatgaaagagatgctgcatatgataactgttcttttttattgtcttgtcccatacaaatagatgtataggtcattcataaggaggaaaaaATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_cereus_ATCC14579                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:129 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-12.20 kcal/mol Antiterminator: Size=47 nt.     Delta G= -6.10 kcal/mol Anti-antiterminator:   Size=50 nt.     Delta G=-14.60 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GTTACGTCAGAAGAGAATGGTCGAACAAAGTGTAGAACCGTCTCAAGATGTCATTTGT TCTTTGAAAATAGCAGAGGCGAAATATTTCTTTTTGTTGAAAGAAGCAAAGCGTCGTC CTGTAAAAATGGAACAATGGTAAaaggttctgctttctaagcaggcctttttattttgttttttaagtgctgaggtattgttt tatttagtgtatatgaaagagatgctgcatatgataactgttcttttttattgtcttgtcccatacaaatagatgtataggtcattcataaggaggaaaa aATG     BC0028 Gene: BC0028     GI: 30018299     BI number: BC0028     GOG: NOG08708     Description: SigmaK-factor processing regulatory protein Bof   T T  G G  A TA        AA TA       G  C TG       G  A TA        TA TA        AT CG       A  G |  C      A  G TA       A  T TA       A  A        c TA       T  A      t  t A  G      G  a       ta T  C       Ta        ta A  G       Cg        cg A  |       Cg        gc AT       T  t       ta GC       G  t       cg CG       C  c      t  | GT       T  |       tg GC        Gt        gc A  |       Cg        gc GC        Gc        at AT        At        at CG        At        At GT        At        At                         tattttgttttttaagtgctgaggtattgttttatttagtgtatatgaaagagatgctgcatatgataactgttcttttttattgtcttgtcccatacaaatagatgtataggtcattcataaggaggaaaaaATG     ..................................................................................................................