                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:44 nt.     Distance to run of Ts=0 nt.   Size=18 nt.     Delta G= -7.80 kcal/mol
Antiterminator: Size=58 nt.     Delta G= -7.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

taaggattagaagtataaaataggttcacttaaatagggagggaagattATGAAATTACAAAGTGAAGTTTGTATTGTT
TGTGAGACAAAAAGAAAAGAAGGTATATATGTTTATAATAATTTAATATGCCATGAAT
GTGAAAAGGATATGGTGAATACAGAGACAGATGATCCGAAATATATATATTATTTAAA
GCAGCTTCGAAAATTAGAAGTATCATATTTTTAAataggcatatgcctattattttttttgttctgtataataga
tagagaatgaataataaggaagagatgtagATG

    BC0035 --- BC0036 --- BC0037 --- BC0038 --- BC0039 Gene: BC0035     GI: 30018301     BI number: BC0035     GOG: COG1982     Description: Arginine decarboxylase Gene: BC0036     GI: 30018302     BI number: BC0036     GOG: COG0125     Description: Thymidylate kinase Gene: BC0037     GI: 30018303     BI number: BC0037     GOG: COG0470     Description: DNA polymerase III, delta' subunit Gene: BC0038     GI: 30018304     BI number: BC0038     GOG: COG1774     Description: Tpl protein Gene: BC0039     GI: 30018305     BI number: BC0039     GOG: COG4467     Description: hypothetical protei AA A  T A  T G  A CG TA TA CG GT |  A |  T |  C |  A |  T A  A C  T GT AT AT AT TA TA Ta At        ta Ta       a  t Tg        cg |  g       gc A  c       gc Ta        at At        ta Ta        at At        At             attttttttgttctgtataatagatagagaatgaataataaggaagagatgtagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG1982 Arginine/lysine/ornithine decarboxylases ... can be seen here [F] COG0125 Thymidylate kinase ... can be seen here [L] COG0470 ATPase involved in DNA replication ... can be seen here [S] COG1774 Uncharacterized homolog of PSP1 ... can be seen here [S] COG4467 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_cereus_ATCC14579                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:51 nt.     Distance to run of Ts=0 nt.   Size=16 nt.     Delta G= -6.90 kcal/mol Antiterminator: Size=58 nt.     Delta G= -7.60 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case taaggattagaagtataaaataggttcacttaaatagggagggaagattATGAAATTACAAAGTGAAGTTTGTATTGTT TGTGAGACAAAAAGAAAAGAAGGTATATATGTTTATAATAATTTAATATGCCATGAAT GTGAAAAGGATATGGTGAATACAGAGACAGATGATCCGAAATATATATATTATTTAAA GCAGCTTCGAAAATTAGAAGTATCATATTTTTAAataggcatatgcctattattttttttgttctgtataataga tagagaatgaataataaggaagagatgtagATG     BC0035 --- BC0036 --- BC0037 --- BC0038 --- BC0039 Gene: BC0035     GI: 30018301     BI number: BC0035     GOG: COG1982     Description: Arginine decarboxylase Gene: BC0036     GI: 30018302     BI number: BC0036     GOG: COG0125     Description: Thymidylate kinase Gene: BC0037     GI: 30018303     BI number: BC0037     GOG: COG0470     Description: DNA polymerase III, delta' subunit Gene: BC0038     GI: 30018304     BI number: BC0038     GOG: COG1774     Description: Tpl protein Gene: BC0039     GI: 30018305     BI number: BC0039     GOG: COG4467     Description: hypothetical protei GT A  A A  T G  C AA TT TA AT AT |  T |  T |  T |  A |  A A  a A  t Ga Cg Tg Tc Ca Gt Aa Ct G        ta A       a  t |         cg A         gc A        gc T        at T        ta T        at             tattttttttgttctgtataatagatagagaatgaataataaggaagagatgtagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG1982 Arginine/lysine/ornithine decarboxylases ... can be seen here [F] COG0125 Thymidylate kinase ... can be seen here [L] COG0470 ATPase involved in DNA replication ... can be seen here [S] COG1774 Uncharacterized homolog of PSP1 ... can be seen here [S] COG4467 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................