                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:176 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G=-13.70 kcal/mol
Antiterminator: Size=64 nt.     Delta G=-14.10 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G=-13.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACACCCGTTCCCATACCGAACACGGAAGTTAAGCTCTCTAGCGCCGATGGTAGTTGGG
ACCTTGTCCCTGTGAGAGTAGGACGTCGCCAAGcaactaaacacgagtcaaatgactcgtgttttttcgtgttttc
ttttataatccatagtaattaaaaaaatatgcttaaataattactattttgattaaatgcaggggaatgtggctaggatagtgaataagcaaaagagttg
caaattttattaatacgtatataattaaagtcaaagatagtcaaagtcaataaaggtggcggataaATG

    BC0099 Gene: BC0099     GI: 30018349     BI number: BC0099     GOG: COG4463     Description: Transcriptional regulator cts            AG           G  A            TG            GT            TA           C  |            CG   A        CG G  T       TA CG        GC CG        TG GT       T  T |  A      C  C CG       C  G GT       A  | AT        GC TG        GC CG       |  A T  |      |  A CG       |  G TA        Gc C  C       Ta GC        Ta AT        Gc AT        At        aa TG        Ta       a  t T  T      G  a       cg G  C      G  a       ta A  C      T  c       gc A  |      A  a       at GC        Gc        gc GT        Cg        cg CG       |  a       at AT        Cg        cg CG        Gt        at                         tttttcgtgttttcttttataatccatagtaattaaaaaaatatgcttaaataattactattttgattaaatgcaggggaatgtggctaggatagtgaataagcaaaagagttgcaaattttattaatacgtatataattaaagtcaaagatagtcaaagtcaataaaggtggcggataaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG4463 Transcriptional repressor of class III stress genes ... can be seen here     ..................................................................................................................